PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_1213_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 340aa    MW: 37307.8 Da    PI: 7.9232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_1213_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-11555146
                                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
                      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                                         +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  cra_locus_1213_iso_1_len_1719_ver_3  5 KQKWTAEEEAALKAGIARYGVGKWSTILKDPEfsgvlRSRSNVDLKDKWRN 55
                                         79************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.552163IPR017930Myb domain
SuperFamilySSF466891.35E-15291IPR009057Homeodomain-like
SMARTSM007174.1E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-14556IPR009057Homeodomain-like
PfamPF002491.9E-7555IPR001005SANT/Myb domain
CDDcd116607.77E-21657No hitNo description
SuperFamilySSF467852.29E-13117189IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.2E-12118183IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.103.0E-12120181IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.274120200IPR005818Linker histone H1/H5, domain H15
PfamPF005388.3E-9125181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI ARYGVGKWST ILKDPEFSGV LRSRSNVDLK DKWRNINVMV  60
NGLGSRQRGR PACKSIQLPP KPDENTMALE TVVENDSDVL NVKPLAAAAE RLPNATSKKP  120
ISRLDDLIME AIAKLKEPRG SSRAIIASYI EERYCVPPNF ERILATNLKL LTENQQLLKV  180
TNFHRWNTAE MLGLFFILEK NTSFVFSQGT LEIIISMLCS QVKHQYRIVT SPTSLRVRNK  240
PAPSLLDGVE KDSSSVERNG IKIITKAQVD AELEMMKSMS AEEAAAIAAQ AIAQAEAAIA  300
EAEAAAKEAE KAEAEAEASQ CFADATAAAL MEGFYRSVRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786348.12e-96PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009786349.12e-96PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009786350.12e-96PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009786351.12e-96PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_009786352.12e-96PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506260.12e-96PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506327.12e-96PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506387.12e-96PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506453.12e-96PREDICTED: telomere repeat-binding factor 1-like
RefseqXP_016506515.12e-96PREDICTED: telomere repeat-binding factor 1-like
TrEMBLA0A068U2436e-99A0A068U243_COFCA; Uncharacterized protein
STRINGSolyc02g064630.2.11e-89(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51222235